Pepper Marker Database

Pepper genome (Pepper.v.1.5, Kim et al. 2014 Nat Genet) list : Pepper.v.1.5.chr03

Order of Pepper markers and Pepper gene models

Pepper markers on the Pepper genome (Pepper.v.1.5, Kim et al. 2014 Nat Genet)

Total Entries: 568

Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name PIC value PIC lines Genome
Name Position*
CaES3749 Pepper.v.1.5.chr03 240825869 5e-39
CaES3091 Pepper.v.1.5.chr03 240904698 2e-47
CaES3674 Pepper.v.1.5.chr03 240909337 1e-153
CaES3490 Pepper.v.1.5.chr03 240973535 1e-107
CaES2756 Pepper.v.1.5.chr03 240976609 9e-83
CaES4555 Pepper.v.1.5.chr03 241012059 1e-77
CaES5185 Pepper.v.1.5.chr03 241233094 4e-90
CaES3741 Pepper.v.1.5.chr03 241268303 1e-121
CaES5697 Pepper.v.1.5.chr03 241381618 4e-78
CaES1643 Pepper.v.1.5.chr03 241420243 1e-149
CaES3838 Pepper.v.1.5.chr03 241420886 1e-103
CaES0808 Pepper.v.1.5.chr03 241515865 5e-74
CaES4566 Pepper.v.1.5.chr03 241520828 1e-132
CaES1624 Pepper.v.1.5.chr03 241524717 1e-121
CaES1450 Pepper.v.1.5.chr03 241709862 3e-73
CaES2371 Pepper.v.1.5.chr03 241710776 2e-62
CaES4946 0.0 0 Pepper.v.1.5.chr03 241724221 1e-82
CaES4728 Pepper.v.1.5.chr03 241724494 1e-111
* Best match positions of the marker sequences to the genome databases using tblastx (<1e-20) without filtering query sequence.

Total Entries: 568

MarkerDB | Capsicum annuum