Pepper Marker Database

Pepper genome (Zunla-1_Release_2.0, Qin et al. 2014 PNAS) list : Chr04

Order of Pepper markers and Pepper gene models

Pepper markers on the Pepper genome (Zunla-1_Release_2.0, Qin et al. 2014 PNAS)

Total Entries: 360


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name PIC value PIC lines Genome
(Zunla-1_Release_2.0)
Evalue
Name Position*
CaES1112 0.499 190 Chr04 305084 1e-124
CaES4686 Chr04 392447 1e-122
CaES4433 Chr04 467729 5e-63
CaES3973 Chr04 473011 1e-114
CaES4195 Chr04 487170 1e-104
CaES1847 Chr04 489731 1e-136
CaES3868 Chr04 495740 1e-105
CaES0781 Chr04 499990 1e-110
CaES1775 Chr04 500182 2e-92
CaES3224 Chr04 504205 8e-73
CaES2528 Chr04 583335 5e-93
CaES2020 Chr04 804140 8e-68
CaES0956 Chr04 804140 5e-68
CaES2298 Chr04 834482 2e-73
CaES1947 Chr04 1004803 1e-138
CaES5068 Chr04 1322104 1e-79
CaES2065 Chr04 1323627 1e-142
CaES4019 Chr04 1431831 1e-102
CaES3437 Chr04 1485311 1e-154
CaES5708 Chr04 1577847 4e-58
CaES3430 Chr04 1825708 1e-135
CaES2399 Chr04 1872630 8e-72
CaES5475 Chr04 2051966 6e-54
CaES4863 Chr04 2058066 1e-131
CaES4258 Chr04 2058262 1e-126
CaES0834 Chr04 2131503 8e-88
CaES2167 Chr04 2131533 1e-116
CaES2247 Chr04 2192125 1e-129
CaES4921 Chr04 2192287 4e-59
CaES1645 Chr04 2232626 3e-89
CaES5545 Chr04 2262439 6e-83
CaES1310 Chr04 2352431 1e-135
CaES3742 Chr04 2379912 1e-105
CaES4992 Chr04 2431682 5e-62
CaES3921 Chr04 2677438 3e-83
CaES4018 Chr04 2852831 1e-129
CaES3455 Chr04 2882905 1e-128
CaES4068 Chr04 3758036 1e-126
CaES4746 Chr04 3896750 1e-136
CaES1232 Chr04 3932988 1e-117
CaES0319 Chr04 4076552 1e-116
CaES0280 Chr04 4117646 1e-131
CaES2750 Chr04 4686212 1e-140
CaES4947 Chr04 4698213 8e-85
CaES1321 Chr04 5152713 1e-136
CaES2481 Chr04 5152803 1e-126
CaES0839 Chr04 5253041 3e-51
CaES0335 Chr04 5255811 1e-74
CaES1743 Chr04 5401944 1e-112
CaES4126 Chr04 5532867 1e-113
* Best match positions of the marker sequences to the genome databases using tblastx (<1e-20) without filtering query sequence.

Total Entries: 360


MarkerDB | Capsicum annuum