Radish Marker Database

B. rapa genome (v1.2) list : A06

Order of Daikon markers and B. rapa gene models

Daikon markers on the B. rapa genome (v1.2)

Total Entries: 466


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name Genome
(B. rapa v1.2)
Evalue GHRI
Name Position* Linkage Position
RSS0296 A06 18985 5e-84
RSS0312 A06 198655 1e-119
RSS3403 A06 296267 1e-103
RSS0925 A06 365228 3e-73 LG9 5.8
RSS1860 A06 402773 1e-103
RSS1705 A06 501356 3e-76
RSS2383 A06 504827 2e-24
RSS2354 A06 505655 7e-71
RSS2950 A06 528165 2e-88
RSS0187 A06 568715 2e-83
RSS3143 A06 575717 1e-117
RSS2525 A06 577017 1e-108
RSS2156 A06 659471 3e-27
RSS0954 A06 667841 9e-99
RSS0950 A06 684824 2e-94
RSS0704 A06 803385 1e-122
RSS1929 A06 804043 6e-13
RSS3572 A06 854478 1e-126
RSS3177 A06 893854 4e-83 LG3 108.5
RSS0609 A06 896283 2e-94 LG3 107.6
RSS0471 A06 995309 5e-51 LG9 7.8
RSS3294 A06 995857 9e-91
RSS0488 A06 1005787 1e-116
RSS3749 A06 1017550 4e-87
RSS1198 A06 1044856 2e-35
RSS2420 A06 1126850 1e-100
RSS1648 A06 1329616 2e-61
RSS1121 A06 1329658 4e-52
RSS3586 A06 1457746 1e-124
RSS0850 A06 1532069 2e-80
RSS0430_a A06 1575948 1e-123 LG3 104.1
RSS0430 A06 1575948 1e-123 LG9 9.7
RSS0419 A06 1576147 1e-100
RSS0843 A06 1606608 1e-133
RSS2798 A06 1660154 1e-133
RSS0485 A06 1751819 1e-129 LG3 104.4
RSS1051 A06 1752668 4e-89
RSS0982 A06 1904524 1e-120
RSS1568 A06 1917649 1e-115
RSS2770 A06 1920304 1e-23 LG3 53.8
RSS3100 A06 2060548 3e-73
RSS2424 A06 2121939 8e-29
RSS3882 A06 2178206 1e-56
RSS2328 A06 2229278 7e-64
RSS3974 A06 2256818 2e-99
RSS2837 A06 2274124 2e-59
RSS0387 A06 2298632 2e-87
RSS3318 A06 2573488 7e-95
RSS1023 A06 2575661 1e-120
RSS3674 A06 2821368 2e-82
* Best match positions of the marker sequences to the genome databases using tblastx (<1e-20) without filtering query sequence.

Total Entries: 466


MarkerDB | Raphanus sativus