Tomato Marker Database

Tomato genome (SL2.40) list : SL2.40ch12

Order of Tomato markers and tomato gene models

Tomato markers on the Tomato genome (SL2.40)

Total Entries: 1993


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name Genome
(SL2.40)
Evalue Expen2000 AMF2 MMF2
Name Position* Linkage Position Linkage Position Linkage Position
6535_132 SL2.40ch12 43620592 0.0 ch12 80.689
12077_164 SL2.40ch12 44544833 0.0 ch12 83.098
TES1800 SL2.40ch12 44710363 0.0 ch12 60.203 ch12 83.926
1548_188 SL2.40ch12 44710363 0.0 ch12 83.926 ch12 57.18
16252_83 SL2.40ch12 44796762 1e-106 ch12 84.919
TGS1850 SL2.40ch12 43892828 0.0 ch12 85.471
12164_141 SL2.40ch12 46073948 0.0 ch12 88.689
TES0317 SL2.40ch12 46224289 0.0 ch12 64.353 ch12 90.653
4676_2051 SL2.40ch12 46655860 0.0 ch12 92.985
15531_820 SL2.40ch12 47093249 0.0 ch12 93.483 ch12 66.872
TGS3327 SL2.40ch12 46889948 0.0 ch12 93.601
TGS3485 SL2.40ch12 46975088 0.0 ch12 58.793 ch12 93.601
16162_371 SL2.40ch12 47085814 0.0 ch12 93.937
TGS0446 SL2.40ch12 47419965 0.0 ch12 95.692
2624_367 SL2.40ch12 47552661 1e-146 ch12 96.904 ch12 68.796
6781_283 SL2.40ch12 48555003 1e-177 ch12 102.544 ch12 79.233
TES1122 SL2.40ch12 64104992 0.0 ch12 101.659 ch12 123.889
6265_175 SL2.40ch12 64326962 0.0 ch12 124.779
27226_432 SL2.40ch12 64331555 0.0 ch12 124.779
3231_206 SL2.40ch12 64598862 1e-161 ch12 127.135
5268_364 SL2.40ch12 64656095 0.0 ch12 127.135
12953_522 SL2.40ch12 64706866 0.0 ch12 128.023
9429_847 SL2.40ch12 64722514 0.0 ch12 128.023
17574_373 SL2.40ch12 64769624 0.0 ch12 128.947 ch12 103.594
TES0202 SL2.40ch12 64769622 0.0 ch12 129.129
4766_328 SL2.40ch12 64810705 0.0 ch12 130.863 ch12 103.992
9010_368 SL2.40ch12 64866483 0.0 ch12 130.863 ch12 103.984
2939_95 SL2.40ch12 64901582 0.0 ch12 130.863 ch12 103.992
6139_385 SL2.40ch12 64908090 0.0 ch12 131.316 ch12 103.992
15099_235 SL2.40ch12 64988823 0.0 ch12 131.772 ch12 103.992
17842_80 SL2.40ch12 65140207 0.0 ch12 132.185
TES1472 SL2.40ch12 65131168 0.0 ch12 132.202
2852_863 SL2.40ch12 65368006 0.0 ch12 133.571
7328_303 SL2.40ch12 65375016 0.0 ch12 133.571
2559_638 SL2.40ch12 65385179 0.0 ch12 133.571
TGS0591 SL2.40ch12 65390523 0.0 ch12 118.396 ch12 134.701
TES5376 SL2.40ch12 4748 0.0
TES7292 SL2.40ch12 4765 0.0
TES4022 SL2.40ch12 6852 0.0
TES4911 SL2.40ch12 34803 9e-45
15328_256 SL2.40ch12 100420 0.0
TGS2336 SL2.40ch12 122975 0.0
TES0517 SL2.40ch12 147204 0.0
TES4093 SL2.40ch12 167843 0.0
TES7218 SL2.40ch12 171985 0.0
21604_305 SL2.40ch12 177485 0.0
TGS10429 SL2.40ch12 188351 0.0
TGS1258 SL2.40ch12 195980 0.0
TES1635 SL2.40ch12 210003 0.0 ch12 7.679
TES4766 SL2.40ch12 233209 1.3
* Best match positions of the marker sequences to the genome databases using blastn without filtering query sequence.

Total Entries: 1993


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