Radish Marker Database

B. rapa genome (v1.2) list : A04

Order of Daikon markers and B. rapa gene models

Daikon markers on the B. rapa genome (v1.2)

Total Entries: 218


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name Genome
(B. rapa v1.2)
Evalue GHRI
Name Position* Linkage Position
RSS1169 A04 15770 1e-109
RSS1832 A04 58023 5e-74
RSS0409 A04 62430 1e-125
RSS2030 A04 146420 0.13
RSS2340 A04 371694 1e-120
RSS1250 A04 401937 3e-57
RSS3438 A04 570331 1e-80
RSS0869 A04 579052 2e-31
RSS0867 A04 670090 4e-56
RSS0522 A04 872665 6e-47
RSS3986 A04 872971 1e-116
RSS0103 A04 925240 1e-117
RSS3333 A04 1014561 8e-42
RSS3340 A04 1066204 4e-66
RSS1938 A04 1242135 5e-43
RSS1150 A04 1243634 6e-47
RSS2504 A04 1313819 2e-89
RSS3604 A04 1455392 4e-89
RSS3246 A04 1688453 1e-143 LG4 4.6
RSS1603 A04 1689428 2e-80
RSS0142 A04 1855877 3e-97
RSS2130 A04 1992772 7e-91
RSS1704 A04 2001077 2e-70
RSS2370 A04 2003120 1e-98
RSS3612 A04 2044348 7e-67
RSS1763_a A04 2093857 2e-54 LG3 105.4
RSS1763 A04 2093857 2e-54 LG3 88.7
RSS1666 A04 2098600 4e-81
RSS1802 A04 2098642 3e-87
RSS3421 A04 2503010 7e-85
RSS3370 A04 2508339 1e-115
RSS3414 A04 2889787 1e-95
RSS2996 A04 2893478 9e-52
RSS1054 A04 3229578 2e-18 LG3 143.7
RSS0237 A04 3337044 8e-88
RSS0733 A04 3529976 1e-112
RSS0649 A04 3747050 4e-62 LG4 6.0
RSS0418 A04 3984104 2e-52
RSS1042 A04 3987420 5e-79 LG1 16.0
RSS1693 A04 4286912 9e-95
RSS0304 A04 4333400 1e-116
RSS3394 A04 4333940 3e-28 LG4 7.1
RSS3409 A04 4408197 3e-95
RSS0024 A04 4443179 1e-58
RSS1571 A04 4479313 3e-81
RSS3700 A04 4508257 4e-84
RSS1204 A04 4571586 1e-56
RSS1773 A04 4898021 1e-120
RSS3468 A04 5081235 0.004
RSS3425 A04 5123976 1e-105
* Best match positions of the marker sequences to the genome databases using tblastx (<1e-20) without filtering query sequence.

Total Entries: 218


MarkerDB | Raphanus sativus