Tomato Marker Database

Tomato genome (SL2.40) list : SL2.40ch12

Order of Tomato markers and tomato gene models

Tomato markers on the Tomato genome (SL2.40)

Total Entries: 1993


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name Genome
(SL2.40)
Evalue Expen2000 AMF2 MMF2
Name Position* Linkage Position Linkage Position Linkage Position
TGS0379 SL2.40ch12 3612741 0.0 ch01 28.393 ch12 50.799
SSR135 SL2.40ch12 4134678 1e-102 ch01 59.46
TEI0400 SL2.40ch12 42568354 1e-155 ch06 76.139
T608 SL2.40ch12 5641518 1e-171 ch08 88.208
TEI0429 SL2.40ch12 2453221 1e-175 ch11 34.802
TES1697 SL2.40ch12 2155866 6e-99 ch11 56.064
TES1635 SL2.40ch12 210003 0.0 ch12 7.679
cLPT-6-E9 SL2.40ch12 559601 0.0 ch12 12.168
TEI0315 SL2.40ch12 492043 0.0 ch12 12.387
TES0618 SL2.40ch12 787912 1e-169 ch12 15.067
TES1919 SL2.40ch12 1413220 0.0 ch12 18.245
TES0027 SL2.40ch12 1498919 1e-111 ch12 21.438 ch12 17.623
U216669 SL2.40ch12 1352542 0.0 ch12 24.461
tme0054 SL2.40ch12 1349233 0.0 ch12 26.442
TES1515 SL2.40ch12 1567282 0.0 ch12 27.407
TES1889 SL2.40ch12 1810633 0.0 ch12 30.509
TES1420 SL2.40ch12 1759697 0.0 ch12 31.184
TGS2885 SL2.40ch12 1663654 0.0 ch12 32.038
TM26 SL2.40ch12 2354225 1e-126 ch12 33.003
TEI0474 SL2.40ch12 2183684 1e-138 ch12 33.909
T28 SL2.40ch12 2354225 1e-139 ch12 35.495
TEI0737 SL2.40ch12 2247725 0.0 ch12 35.647
TGS1078 SL2.40ch12 2415183 1e-156 ch12 36.039
TEI0311 SL2.40ch12 2354582 0.0 ch12 36.732
TES1125 SL2.40ch12 3807316 0.0 ch12 37.969
T989 SL2.40ch12 2684203 0.0 ch12 38.954
CT211 SL2.40ch12 2921920 1e-137 ch12 39.512
TGS0244 SL2.40ch12 6071086 0.0 ch12 40.4
TEI0111 SL2.40ch12 3150208 0.0 ch12 41.225
TES0538 SL2.40ch12 3154125 0.0 ch12 42.386
TES0716 SL2.40ch12 3563939 0.0 ch12 43.553
T1263 SL2.40ch12 3440088 0.0 ch12 44.573
TEI0256 SL2.40ch12 3778194 0.0 ch12 45.382
TES0316 SL2.40ch12 3711699 0.0 ch12 46.034
TES1501 SL2.40ch12 3816544 0.0 ch12 46.527
TES1978 SL2.40ch12 3871773 0.0 ch12 46.553
TGS0144 SL2.40ch12 4308849 0.0 ch12 46.98 ch12 60.832
TES1564 SL2.40ch12 4264115 0.0 ch12 47.235
TGS1200 SL2.40ch12 4033181 0.0 ch12 48.031
TGS0456 SL2.40ch12 4766690 1e-161 ch12 48.57 ch12 63.819
TES2042 SL2.40ch12 4915410 0.0 ch12 48.922
TGS1083 SL2.40ch12 4991221 0.0 ch12 49.485
TGS0724 SL2.40ch12 4558753 0.0 ch12 49.877 ch12 62.202
TGS3266 SL2.40ch12 4914912 0.0 ch12 50.327
TG360 SL2.40ch12 4678024 0.0 ch12 50.67
TES0406 SL2.40ch12 4682040 1e-167 ch12 50.816
TGS1502 SL2.40ch12 4591720 0.0 ch12 51.133
TES1571 SL2.40ch12 5352643 0.0 ch12 51.912
TGS1093 SL2.40ch12 45790491 0.0 ch12 52.744
TGS1988 SL2.40ch12 5164896 0.0 ch12 54.272
* Best match positions of the marker sequences to the genome databases using blastn without filtering query sequence.

Total Entries: 1993


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