| Marker name | Locus name | Linkage group | Position (cM) | Status of multiple loci |
|---|---|---|---|---|
| FVES2629 | FVES2629_6d | 6D | 0.0 | Multi_H |
| FVES1154 | FVES1154_6d | 6D | 13.0 | Multi_H |
| FVES2636 | FVES2636_6d | 6D | 22.3 | Multi_NH |
| FVES0228 | FVES0228 | 6D | 26.3 | Single |
| FVES2875 | FVES2875_6d | 6D | 26.5 | Multi_H |
| FATS0090 | FATS0090_6d | 6D | 27.9 | Multi_H |
| FVES2445 | FVES2445_6d | 6D | 29.7 | Multi_H |
| FAES0023 | FAES0023_6d1 | 6D | 32.2 | Multi_H&S |
| FVES2294 | FVES2294_6d | 6D | 32.2 | Multi_H |
| FVES3634 | FVES3634_6d | 6D | 33.5 | Multi_H |
| FATS0020 | FATS0020_6d | 6D | 34.0 | Multi_H |
| FVES1724 | FVES1724 | 6D | 34.8 | Single |
| FATS0128 | FATS0128 | 6D | 37.2 | Multi_NM |
| FAES0381 | FAES0381_6d | 6D | 37.8 | Multi_H |
| FVES3227 | FVES3227 | 6D | 38.3 | Multi_NM |
| FVES1271 | FVES1271_6d | 6D | 38.8 | Multi_H |
| FVES0538 | FVES0538_6d | 6D | 39.6 | Multi_H |
| FVES3449 | FVES3449_6d | 6D | 40.1 | Multi_H |
| FAES0070 | FAES0070_6d | 6D | 40.6 | Multi_H |
| FVES3258 | FVES3258 | 6D | 40.9 | Multi_NM |
| FAES0423 | FAES0423 | 6D | 41.9 | Single |
| FVES3441 | FVES3441 | 6D | 42.4 | Single |
| FVES0968 | FVES0968 | 6D | 42.9 | Single |
| FVES0191 | FVES0191_6d1 | 6D | 44.1 | Multi_S |
| FVES2913 | FVES2913 | 6D | 44.8 | Single |
| FVES2973 | FVES2973 | 6D | 45.0 | Multi_NM |
| FVES1339 | FVES1339 | 6D | 45.2 | Single |
| FVES1125 | FVES1125 | 6D | 45.6 | Single |
| FVES0669 | FVES0669_6d | 6D | 45.7 | Multi_H |
| FVES1848 | FVES1848 | 6D | 45.9 | Single |
| FVES3387 | FVES3387_6d2 | 6D | 46.0 | Multi_S |
| FATS0047 | FATS0047_6d | 6D | 46.2 | Multi_H |
| FVES3387 | FVES3387_6d1 | 6D | 46.5 | Multi_S |
| FVES1256 | FVES1256_6d | 6D | 46.8 | Multi_H |
| FVES0955 | FVES0955 | 6D | 47.1 | Single |
| FVES0511 | FVES0511 | 6D | 47.2 | Multi_NM |
| FVES1830 | FVES1830_6d | 6D | 47.8 | Multi_H |
| FVES1081 | FVES1081 | 6D | 48.3 | Multi_NM |
| FVES2826 | FVES2826_6d | 6D | 51.1 | Multi_NH |
| FVES0191 | FVES0191_6d2 | 6D | 57.6 | Multi_S |
| FVES0463 | FVES0463_6d3 | 6D | 58.6 | Multi_S |
| FAES0023 | FAES0023_6d2 | 6D | 59.6 | Multi_H&S |
| FVES1779 | FVES1779_6d | 6D | 61.2 | Multi_H |
| FVES0451 | FVES0451 | 6D | 62.6 | Multi_NM |
| FVES0191 | FVES0191_6d3 | 6D | 63.9 | Multi_S |
| FVES0463 | FVES0463_6d1 | 6D | 65.1 | Multi_S |
| FVES3384 | FVES3384_6d | 6D | 65.8 | Multi_H |
| FVES0005 | FVES0005_6d | 6D | 68.8 | Multi_H |
| FVES0463 | FVES0463_6d2 | 6D | 76.4 | Multi_S |
| FVES3372 | FVES3372_6d | 6D (Sachinoka) | Multi_H |