Pepper Marker Database

Pepper genome (Zunla-1_Release_2.0, Qin et al. 2014 PNAS) list : Chr06

Order of Pepper markers and Pepper gene models

Pepper markers on the Pepper genome (Zunla-1_Release_2.0, Qin et al. 2014 PNAS)

Total Entries: 412


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name PIC value PIC lines Genome
(Zunla-1_Release_2.0)		 Evalue
Name Position*
CaES5065 Chr06 32102562 1e-124
CaES5077 Chr06 13082962 2e-82
CaES5109 Chr06 218751437 1e-127
CaES5129 Chr06 935452 1e-116
CaES5142 Chr06 977208 1e-134
CaES5171 Chr06 217861010 1e-152
CaES5172 Chr06 91602090 1e-139
CaES5182 Chr06 17617398 1e-107
CaES5184 Chr06 4875512 1e-134
CaES5201 Chr06 90973537 8e-81
CaES5205 Chr06 4627394 6e-84
CaES5236 Chr06 72543966 1e-135
CaES5238 Chr06 9491306 1e-126
CaES5241 Chr06 3775975 3e-43
CaES5243 Chr06 13235246 3e-72
CaES5253 0.492 187 Chr06 314014 2e-47
CaES5263 Chr06 160148725 3e-82
CaES5266 Chr06 216075479 7e-86
CaES5270 Chr06 9662577 5e-80
CaES5271 Chr06 12372005 9e-86
CaES5314 Chr06 193626456 1e-104
CaES5330 Chr06 216640721 1e-108
CaES5348 Chr06 170342323 4e-98
CaES5354 Chr06 22685439 8e-86
CaES5359 Chr06 24534542 1e-107
CaES5368 Chr06 35623020 5e-83
CaES5380 Chr06 20699319 6e-40
CaES5382 Chr06 199439899 3e-55
CaES5383 Chr06 182244453 1e-93
CaES5385 Chr06 88575953 9e-94
CaES5387 Chr06 30249942 7e-32
CaES5390 Chr06 169368747 1e-42
CaES5392 0.179 192 Chr06 217274423 1e-124
CaES5403 Chr06 7832397 5e-60
CaES5405 Chr06 13023033 4e-71
CaES5408 Chr06 169096408 1e-122
CaES5409 Chr06 9287130 5e-87
CaES5420 Chr06 25294275 3e-43
CaES5428 Chr06 115908801 5e-77
CaES5435 Chr06 89069525 4e-97
CaES5504 Chr06 11864469 4e-91
CaES5512 0.246 191 Chr06 161197567 1e-114
CaES5524 Chr06 209271685 1e-102
CaES5531 Chr06 85801931 2e-63
CaES5537 Chr06 191139012 4e-49
CaES5539 Chr06 935452 4e-63
CaES5542 Chr06 206481725 3e-72
CaES5560 Chr06 41147339 3e-48
CaES5591 Chr06 9818912 5e-96
CaES5610 Chr06 176918012 8e-28
* Best match positions of the marker sequences to the genome databases using tblastx (<1e-20) without filtering query sequence.

Total Entries: 412

MarkerDB | Capsicum annuum