Pepper Marker Database

Pepper genome (Zunla-1_Release_2.0, Qin et al. 2014 PNAS) list : Chr00

Order of Pepper markers and Pepper gene models

Pepper markers on the Pepper genome (Zunla-1_Release_2.0, Qin et al. 2014 PNAS)

Total Entries: 604


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name PIC value PIC lines Genome
(Zunla-1_Release_2.0)		 Evalue
Name Position*
CaES1943 Chr00 603762467 1e-121
CaES1952 Chr00 350115321 1e-91
CaES1975 Chr00 310247223 5e-39
CaES1983 Chr00 542314354 1e-149
CaES1984 Chr00 584447423 1e-119
CaES1989 Chr00 584022378 1e-77
CaES1996 Chr00 618795090 1e-78
CaES2000 Chr00 476000623 4e-82
CaES2011 Chr00 170027590 1e-92
CaES2016 Chr00 170090445 3e-96
CaES2026 Chr00 660757947 1e-124
CaES2032 Chr00 402743161 1e-130
CaES2045 Chr00 523534450 1e-103
CaES2050 Chr00 392164857 1e-74
CaES2053 Chr00 470416656 1e-143
CaES2061 Chr00 452230829 9e-57
CaES2064 Chr00 587569428 3e-92
CaES2074 Chr00 509593899 1e-136
CaES2088 Chr00 577165455 1e-118
CaES2095 Chr00 538813972 5e-66
CaES2099 Chr00 435727136 8e-94
CaES2121 Chr00 525532230 1e-74
CaES2129 Chr00 652082382 2e-80
CaES2159 Chr00 712017384 1e-148
CaES2160 Chr00 545624522 5e-94
CaES2170 Chr00 618250269 1e-133
CaES2171 Chr00 508889150 1e-113
CaES2191 Chr00 494860488 1e-125
CaES2196 Chr00 666816612 8e-32
CaES2197 Chr00 502176292 1e-119
CaES2205 Chr00 245678566 7e-88
CaES2216 Chr00 190426871 1e-133
CaES2219 Chr00 667198527 1e-124
CaES2228 Chr00 507835395 6e-86
CaES2253 Chr00 478872599 1e-128
CaES2268 Chr00 627200964 6e-78
CaES2283 Chr00 318048176 1e-129
CaES2289 Chr00 525104465 1e-48
CaES2313 Chr00 422230304 1e-106
CaES2322 Chr00 227456004 1e-114
CaES2326 Chr00 497433350 1e-110
CaES2329 Chr00 415945244 1e-122
CaES2333 Chr00 421539650 1e-161
CaES2339 Chr00 159867800 8e-76
CaES2353 Chr00 475302370 5e-54
CaES2366 Chr00 558388652 1e-119
CaES2372 Chr00 185479745 1e-152
CaES2376 Chr00 616237474 1e-134
CaES2382 Chr00 455277519 1e-119
CaES2383 Chr00 539148749 3e-73
* Best match positions of the marker sequences to the genome databases using tblastx (<1e-20) without filtering query sequence.

Total Entries: 604

MarkerDB | Capsicum annuum