Pepper Marker Database

Pepper genome (Pepper.v.1.5, Kim et al. 2014 Nat Genet) list : Pepper.v.1.5.chr07

Order of Pepper markers and Pepper gene models

Pepper markers on the Pepper genome (Pepper.v.1.5, Kim et al. 2014 Nat Genet)

Total Entries: 409

Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name PIC value PIC lines Genome
Name Position*
CaES3886 Pepper.v.1.5.chr07 226733569 7e-43
CaES2377 Pepper.v.1.5.chr07 226742741 1e-110
CaES4584 0.297 192 Pepper.v.1.5.chr07 226826127 4e-90
CaES3808 Pepper.v.1.5.chr07 226875675 1e-123
CaES4207 Pepper.v.1.5.chr07 226944881 1e-112
CaES3942 Pepper.v.1.5.chr07 226962513 1e-118
CaES3548 Pepper.v.1.5.chr07 227090634 1e-130
CaES4070 Pepper.v.1.5.chr07 227541693 2e-66
CaES2430 Pepper.v.1.5.chr07 227548463 9e-66
* Best match positions of the marker sequences to the genome databases using tblastx (<1e-20) without filtering query sequence.

Total Entries: 409

MarkerDB | Capsicum annuum