Radish Marker Database

B. rapa genome (v1.2) list : A04

Order of Daikon markers and B. rapa gene models

Daikon markers on the B. rapa genome (v1.2)

Total Entries: 218


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name Genome
(B. rapa v1.2)
Evalue GHRI
Name Position* Linkage Position
RSS1042 A04 3987420 5e-79 LG1 16.0
RSS3844 A04 8082721 1e-80 LG2 50.3
RSS3026 A04 18687224 6e-48 LG3 4.2
RSS1763 A04 2093857 2e-54 LG3 88.7
RSS1763_a A04 2093857 2e-54 LG3 105.4
RSS1054 A04 3229578 2e-18 LG3 143.7
RSS3246 A04 1688453 1e-143 LG4 4.6
RSS0649 A04 3747050 4e-62 LG4 6.0
RSS3394 A04 4333940 3e-28 LG4 7.1
RSS3914 A04 18558276 2e-94 LG4 14.9
RSS1828 A04 18541257 2e-90 LG4 15.5
RSS0993 A04 18098505 4e-94 LG4 17.6
RSS3668 A04 17737482 3e-98 LG4 19.1
RSS2929 A04 17534713 2e-37 LG4 20.5
RSS2415 A04 17178146 1e-110 LG4 22.8
RSS3500 A04 17109113 7e-87 LG4 30.6
RSS3305 A04 17711405 1e-20 LG4 32.2
RSS3247 A04 13571996 1e-71 LG4 39.6
RSS2245 A04 13672476 2e-51 LG4 41.9
RSS2667 A04 14076277 7e-57 LG4 47.8
RSS0393 A04 13342397 6e-71 LG4 48.4
RSS1628 A04 12040948 1e-125 LG4 49.8
RSS3741 A04 12178054 1e-32 LG4 49.8
RSS2491 A04 12180940 4e-53 LG4 49.8
RSS1064 A04 11729370 1e-135 LG4 52.3
RSS3297 A04 11206954 2e-64 LG4 55.0
RSS3847 A04 10365073 9e-89 LG4 58.6
RSS0347 A04 9215849 9e-87 LG4 63.8
RSS3739 A04 8659220 5e-86 LG4 66.3
RSS1061 A04 5962062 1e-130 LG4 76.0
RSS2225 A04 7652228 7e-58 LG8 39.4
RSS1540 A04 14429476 4e-36 LG8 54.1
RSS1169 A04 15770 1e-109
RSS1832 A04 58023 5e-74
RSS0409 A04 62430 1e-125
RSS2030 A04 146420 0.13
RSS2340 A04 371694 1e-120
RSS1250 A04 401937 3e-57
RSS3438 A04 570331 1e-80
RSS0869 A04 579052 2e-31
RSS0867 A04 670090 4e-56
RSS0522 A04 872665 6e-47
RSS3986 A04 872971 1e-116
RSS0103 A04 925240 1e-117
RSS3333 A04 1014561 8e-42
RSS3340 A04 1066204 4e-66
RSS1938 A04 1242135 5e-43
RSS1150 A04 1243634 6e-47
RSS2504 A04 1313819 2e-89
RSS3604 A04 1455392 4e-89
* Best match positions of the marker sequences to the genome databases using tblastx (<1e-20) without filtering query sequence.

Total Entries: 218


MarkerDB | Raphanus sativus