Tomato Marker Database

Tomato genome (SL2.40) list : SL2.40ch12

Order of Tomato markers and tomato gene models

Tomato markers on the Tomato genome (SL2.40)

Total Entries: 1993


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name Genome
(SL2.40)
Evalue Expen2000 AMF2 MMF2
Name Position* Linkage Position Linkage Position Linkage Position
8996_301 SL2.40ch12 242142 0.0 ch12 1.451 ch12 0.0
9542_306 SL2.40ch12 541732 0.0 ch12 2.733 ch12 2.077
5959_219 SL2.40ch12 746104 0.0 ch12 5.545 ch12 4.095
5141_540 SL2.40ch12 802108 0.0 ch12 5.545 ch12 4.095
533_1410 SL2.40ch12 962511 1e-127 ch12 7.425 ch12 5.126
13470_755 SL2.40ch12 1153622 0.0 ch12 10.793 ch12 6.301
6581_362 SL2.40ch12 1166421 0.0 ch12 11.734 ch12 6.693
14548_152 SL2.40ch12 1300264 0.0 ch12 13.223 ch12 7.978
9146_400 SL2.40ch12 1352542 0.0 ch12 13.223 ch12 8.802
7569_429 SL2.40ch12 1971303 0.0 ch12 15.186
9578_326 SL2.40ch12 4462344 0.0 ch12 61.678 ch12 41.441
3901_591 SL2.40ch12 4598061 0.0 ch12 62.732 ch12 42.931
395_815 SL2.40ch12 44347022 1e-155 ch12 56.754
3609_438 SL2.40ch12 44590821 0.0 ch12 57.18
1548_188 SL2.40ch12 44710363 0.0 ch12 83.926 ch12 57.18
5489_727 SL2.40ch12 44036802 0.0 ch12 57.269
15531_820 SL2.40ch12 47093249 0.0 ch12 93.483 ch12 66.872
6308_107 SL2.40ch12 47357670 1e-125 ch12 67.333
5184_425 SL2.40ch12 47440664 0.0 ch12 67.333
2624_367 SL2.40ch12 47552661 1e-146 ch12 96.904 ch12 68.796
2583_221 SL2.40ch12 47842785 1e-173 ch12 71.801
4212_771 SL2.40ch12 48175616 0.0 ch12 75.411
9553_361 SL2.40ch12 48272142 0.0 ch12 76.386
5181_615 SL2.40ch12 48272142 0.0 ch12 76.386
3732_278 SL2.40ch12 48320412 1e-109 ch12 77.242
6781_283 SL2.40ch12 48555003 1e-177 ch12 102.544 ch12 79.233
8816_1079 SL2.40ch12 63326094 0.0 ch12 92.952
5107_1099 SL2.40ch12 63462778 0.0 ch12 92.952
17574_373 SL2.40ch12 64769624 0.0 ch12 128.947 ch12 103.594
9010_368 SL2.40ch12 64866483 0.0 ch12 130.863 ch12 103.984
4766_328 SL2.40ch12 64810705 0.0 ch12 130.863 ch12 103.992
2939_95 SL2.40ch12 64901582 0.0 ch12 130.863 ch12 103.992
6139_385 SL2.40ch12 64908090 0.0 ch12 131.316 ch12 103.992
15099_235 SL2.40ch12 64988823 0.0 ch12 131.772 ch12 103.992
TES5376 SL2.40ch12 4748 0.0
TES7292 SL2.40ch12 4765 0.0
TES4022 SL2.40ch12 6852 0.0
TES4911 SL2.40ch12 34803 9e-45
15328_256 SL2.40ch12 100420 0.0
15328_509 SL2.40ch12 100420 0.0 ch12 0.0
TGS2336 SL2.40ch12 122975 0.0
TES0517 SL2.40ch12 147204 0.0
TES4093 SL2.40ch12 167843 0.0
TES7218 SL2.40ch12 171985 0.0
21604_305 SL2.40ch12 177485 0.0
TGS10429 SL2.40ch12 188351 0.0
TGS1258 SL2.40ch12 195980 0.0
TES1635 SL2.40ch12 210003 0.0 ch12 7.679
TES4766 SL2.40ch12 233209 1.3
TES4953 SL2.40ch12 242114 0.0
* Best match positions of the marker sequences to the genome databases using blastn without filtering query sequence.

Total Entries: 1993


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