Pepper Marker Database

Pepper genome (Zunla-1_Release_2.0, Qin et al. 2014 PNAS) list : Chr04

Order of Pepper markers and Pepper gene models

Pepper markers on the Pepper genome (Zunla-1_Release_2.0, Qin et al. 2014 PNAS)

Total Entries: 360


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name PIC value PIC lines Genome
(Zunla-1_Release_2.0)		 Evalue
Name Position*
CaES3248 Chr04 123001374 1e-105
CaES3274 Chr04 31837934 5e-62
CaES3281 Chr04 212514876 1e-137
CaES3320 Chr04 26073826 5e-59
CaES3337 Chr04 204812096 6e-84
CaES3359 Chr04 63847104 1e-105
CaES3370 Chr04 212241964 1e-111
CaES3395 Chr04 215067587 1e-114
CaES3430 Chr04 1825708 1e-135
CaES3437 Chr04 1485311 1e-154
CaES3440 Chr04 119980306 1e-121
CaES3451 Chr04 207816088 1e-139
CaES3454 Chr04 32792260 1e-120
CaES3455 Chr04 2882905 1e-128
CaES3460 Chr04 9379788 1e-125
CaES3498 Chr04 58972528 1e-63
CaES3531 Chr04 199304173 1e-116
CaES3532 Chr04 170735251 3e-84
CaES3535 Chr04 41255690 3e-99
CaES3550 Chr04 202114185 1e-111
CaES3582 Chr04 74707297 7e-62
CaES3620 Chr04 132702344 1e-133
CaES3624 Chr04 190564552 1e-58
CaES3626 Chr04 7137174 1e-100
CaES3644 Chr04 6707681 1e-137
CaES3651 Chr04 29343183 2e-41
CaES3680 0.0 191 Chr04 54422102 9e-94
CaES3726 Chr04 12521221 1e-100
CaES3740 Chr04 104619362 1e-135
CaES3742 Chr04 2379912 1e-105
CaES3752 Chr04 10178372 1e-122
CaES3803 Chr04 61422495 1e-70
CaES3810 Chr04 48650695 5e-48
CaES3822 Chr04 9556111 1e-114
CaES3852 Chr04 9860510 1e-120
CaES3855 Chr04 30491821 1e-119
CaES3860 Chr04 143491818 1e-115
CaES3863 Chr04 5551459 1e-111
CaES3868 Chr04 495740 1e-105
CaES3901 Chr04 41652505 5e-88
CaES3902 Chr04 142349430 1e-125
CaES3921 Chr04 2677438 3e-83
CaES3943 Chr04 39062086 7e-88
CaES3946 Chr04 58221749 1e-121
CaES3951 Chr04 37848282 1e-113
CaES3973 Chr04 473011 1e-114
CaES3981 Chr04 135344347 1e-113
CaES4018 Chr04 2852831 1e-129
CaES4019 Chr04 1431831 1e-102
CaES4022 Chr04 188464039 8e-39
* Best match positions of the marker sequences to the genome databases using tblastx (<1e-20) without filtering query sequence.

Total Entries: 360

MarkerDB | Capsicum annuum