Pepper Marker Database

Pepper genome (Zunla-1_Release_2.0, Qin et al. 2014 PNAS) list : Chr03

Order of Pepper markers and Pepper gene models

Pepper markers on the Pepper genome (Zunla-1_Release_2.0, Qin et al. 2014 PNAS)

Total Entries: 651


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name PIC value PIC lines Genome
(Zunla-1_Release_2.0)		 Evalue
Name Position*
CaES5375 Chr03 28142826 2e-41
CaES5391 Chr03 227101744 1e-67
CaES5397 Chr03 246006323 1e-118
CaES5402 Chr03 53031167 3e-65
CaES5407 Chr03 258342408 1e-140
CaES5411 Chr03 214568027 2e-84
CaES5419 Chr03 61543559 1e-56
CaES5437 Chr03 16325370 5e-33
CaES5441 Chr03 249111692 2e-25
CaES5445 Chr03 9273203 3e-62
CaES5450 Chr03 241780913 8e-91
CaES5478 Chr03 14926457 9e-46
CaES5490 Chr03 62908202 1e-72
CaES5528 Chr03 2427909 9e-42
CaES5541 Chr03 4006717 4e-90
CaES5543 Chr03 81648477 1e-42
CaES5544 Chr03 241613550 1e-124
CaES5550 Chr03 863437 1e-110
CaES5558 Chr03 34682210 1e-78
CaES5568 Chr03 145723651 1e-102
CaES5570 Chr03 8441079 3e-45
CaES5572 Chr03 253545439 4e-62
CaES5573 Chr03 48915515 1e-104
CaES5574 Chr03 10950979 3e-87
CaES5583 Chr03 214550271 3e-74
CaES5590 Chr03 103305438 1e-133
CaES5606 Chr03 8532332 1e-147
CaES5609 Chr03 97357467 2e-95
CaES5619 Chr03 24161179 1e-128
CaES5625 Chr03 44752022 1e-103
CaES5628 Chr03 241968927 1e-147
CaES5638 Chr03 83606706 1e-121
CaES5643 Chr03 12892392 1e-83
CaES5646 Chr03 249554871 7e-50
CaES5659 Chr03 964227 1e-150
CaES5662 Chr03 24968441 5e-94
CaES5663 Chr03 47068422 1e-112
CaES5678 Chr03 14463385 1e-133
CaES5684 Chr03 19519707 1e-131
CaES5689 Chr03 6742877 6e-99
CaES5694 Chr03 32422910 7e-69
CaES5697 Chr03 1882467 5e-78
CaES5699 Chr03 93064138 2e-87
CaES5705 Chr03 165363076 1e-118
CaES5706 Chr03 244041105 2e-82
CaES5718 Chr03 34749274 1e-107
CaES5734 Chr03 241829455 4e-76
CaES5737 Chr03 195468834 1e-125
CaES5739 Chr03 9699818 4e-87
CaES5746 Chr03 233827296 6e-77
* Best match positions of the marker sequences to the genome databases using tblastx (<1e-20) without filtering query sequence.

Total Entries: 651

MarkerDB | Capsicum annuum