Pepper Marker Database

Pepper genome (Pepper.v.1.5, Kim et al. 2014 Nat Genet) list : Pepper.v.1.5.chr03

Order of Pepper markers and Pepper gene models

Pepper markers on the Pepper genome (Pepper.v.1.5, Kim et al. 2014 Nat Genet)

Total Entries: 568


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name PIC value PIC lines Genome
(Pepper.v.1.5)
Evalue
Name Position*
CaES5646 Pepper.v.1.5.chr03 7268093 2e-46
CaES5662 Pepper.v.1.5.chr03 223916384 5e-88
CaES5663 Pepper.v.1.5.chr03 205573637 1e-112
CaES5689 Pepper.v.1.5.chr03 236786855 4e-99
CaES5694 Pepper.v.1.5.chr03 217841833 3e-69
CaES5697 Pepper.v.1.5.chr03 241381618 4e-78
CaES5699 Pepper.v.1.5.chr03 90046385 5e-89
CaES5705 Pepper.v.1.5.chr03 132678730 1e-118
CaES5706 Pepper.v.1.5.chr03 2698042 2e-82
CaES5715 Pepper.v.1.5.chr03 223343991 2e-33
CaES5718 Pepper.v.1.5.chr03 214467832 1e-107
CaES5728 Pepper.v.1.5.chr03 1777922 1e-40
CaES5734 Pepper.v.1.5.chr03 8018655 8e-59
CaES5737 Pepper.v.1.5.chr03 75743273 1e-125
CaES5739 Pepper.v.1.5.chr03 239109586 3e-85
CaES5745 Pepper.v.1.5.chr03 3278298 3e-51
CaES5746 Pepper.v.1.5.chr03 21272193 5e-77
CaES5747 Pepper.v.1.5.chr03 20886214 2e-45
* Best match positions of the marker sequences to the genome databases using tblastx (<1e-20) without filtering query sequence.

Total Entries: 568


MarkerDB | Capsicum annuum