Radish Marker Database

B. rapa genome (v1.2) list : A05

Order of Daikon markers and B. rapa gene models

Daikon markers on the B. rapa genome (v1.2)

Total Entries: 367


Marker Color EST-SNP EST-SSR Genome-SSR Intron-SNP

Marker Name Genome
(B. rapa v1.2)
Evalue GHRI
Name Position* Linkage Position
RSS1674 A05 21643310 3e-86 LG3 145.8
RSS1684 A05 10921462 1e-104
RSS1695 A05 19616594 2e-57
RSS1696_a A05 10552999 5e-81 LG6 53.2
RSS1697 A05 20285111 1e-112 LG3 26.9
RSS1719 A05 20169297 1e-115 LG3 29.0
RSS1720 A05 6655376 8e-79
RSS1727 A05 1327333 1e-109
RSS1754 A05 1823259 3e-45 LG2 147.2
RSS1772 A05 248526 1e-101
RSS1780 A05 6306091 2e-27
RSS1791 A05 23017247 8e-80
RSS1809 A05 23673302 6e-08 LG1 59.9
RSS1815 A05 18808132 1e-67
RSS1817 A05 17483741 9e-98
RSS1818 A05 22525104 9e-68
RSS1821 A05 6984827 2e-24
RSS1835 A05 18873462 1e-118
RSS1839 A05 7351075 3e-46
RSS1843 A05 8105171 1e-86 LG7 14.3
RSS1862 A05 10018486 2e-72
RSS1873 A05 21040920 2e-78
RSS1882 A05 21700874 8e-97
RSS1887 A05 889500 2e-43
RSS1891 A05 19945762 1e-103
RSS1897 A05 14572865 1e-127
RSS1898 A05 7394189 2e-48
RSS1901 A05 20008508 1e-102
RSS1903 A05 22351832 2e-46 LG3 14.1
RSS1914 A05 23566370 2e-21
RSS1934 A05 5808232 2e-33
RSS1949 A05 6655376 1e-95
RSS1963 A05 65821 1e-114
RSS2039 A05 21965281 4e-80
RSS2040 A05 21697698 1e-103 LG3 17.8
RSS2053 A05 22852601 6e-90
RSS2071 A05 3406645 1e-69
RSS2073 A05 21398854 4e-80
RSS2080 A05 15534753 2e-59 LG3 43.5
RSS2094 A05 15737385 4e-62 LG9 42.9
RSS2103 A05 7373555 3e-63
RSS2124 A05 20911983 5e-42
RSS2159 A05 5855610 9e-74
RSS2173 A05 15722437 5e-14
RSS2189 A05 2775761 1e-128
RSS2210 A05 19875 2e-80
RSS2223 A05 21161988 4e-12
RSS2230 A05 21856063 2e-64
RSS2231 A05 22802473 1e-40
RSS2240 A05 18019179 2e-34
* Best match positions of the marker sequences to the genome databases using tblastx (<1e-20) without filtering query sequence.

Total Entries: 367


MarkerDB | Raphanus sativus